Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ig-like domain-containing protein | CPT03_RS10115 | Not Available | Positive | 2455743 - 2457806 | 70975.6 |
| hypothetical protein | CPT03_RS10120 | Not Available | Positive | 2457819 - 2458517 | 24312.8 |
| gliding motility-associated c-terminal domain-containing protein | CPT03_RS10125 | Not Available | Positive | 2458556 - 2459503 | 34518.7 |
| type ix secretion system membrane protein porp/sprf | CPT03_RS10130 | Not Available | Positive | 2459500 - 2460489 | 36838.3 |
| sensor histidine kinase | CPT03_RS10135 | Not Available | Positive | 2460903 - 2461715 | 30727.1 |
| lytr/algr family response regulator transcription factor | CPT03_RS10140 | Not Available | Positive | 2461690 - 2462451 | 29138.4 |
| hypothetical protein | CPT03_RS10145 | Not Available | Positive | 2462562 - 2462798 | 9147.24 |
| fic family protein | CPT03_RS10150 | Not Available | Negative | 2462778 - 2463890 | 41831.4 |
| nad(p)/fad-dependent oxidoreductase | CPT03_RS10155 | Not Available | Positive | 2463989 - 2465113 | 41714.2 |
| methyltransferase domain-containing protein | CPT03_RS10160 | Not Available | Positive | 2465114 - 2465842 | 28033.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

