Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-rhamnose/proton symporter rhat | CPT03_RS00965 | Not Available | Positive | 257319 - 258398 | 39009.3 |
| bifunctional aldolase/short-chain dehydrogenase | CPT03_RS00970 | Not Available | Positive | 258427 - 260547 | 77287.2 |
| tim barrel protein | CPT03_RS00975 | Not Available | Positive | 260566 - 261840 | 47350.2 |
| fggy-family carbohydrate kinase | CPT03_RS00980 | Not Available | Positive | 261856 - 263214 | 51103.6 |
| eama family transporter | CPT03_RS00985 | Not Available | Negative | 263243 - 264190 | 34269.9 |
| hypothetical protein | CPT03_RS00990 | Not Available | Negative | 264287 - 265213 | 34181.9 |
| 3-dehydro-l-gulonate 2-dehydrogenase | CPT03_RS00995 | Not Available | Positive | 265421 - 266410 | 36123.4 |
| helix-turn-helix domain-containing protein | CPT03_RS01000 | Not Available | Negative | 266456 - 267352 | 34602.1 |
| aldo/keto reductase | CPT03_RS01005 | Not Available | Positive | 267508 - 268359 | 32492.8 |
| aldo/keto reductase | CPT03_RS01010 | Not Available | Positive | 268377 - 269360 | 36219.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

