Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS09815 | Not Available | Negative | 2375945 - 2377471 | 56870.6 |
| tonb-dependent receptor | CPT03_RS09820 | Not Available | Negative | 2377529 - 2380822 | 121383.0 |
| fecr family protein | CPT03_RS09825 | Not Available | Negative | 2381070 - 2382149 | 40379.1 |
| rna polymerase sigma-70 factor | CPT03_RS09830 | Not Available | Negative | 2382213 - 2382761 | 21067.1 |
| meta domain-containing protein | CPT03_RS09835 | Not Available | Negative | 2382936 - 2383385 | 16388.9 |
| dmt family transporter | CPT03_RS09840 | Not Available | Positive | 2383709 - 2384596 | 33297.7 |
| c-type cytochrome | CPT03_RS09845 | Not Available | Negative | 2384620 - 2387295 | 99602.9 |
| arac family transcriptional regulator | CPT03_RS09850 | Not Available | Positive | 2387487 - 2388368 | 33996.9 |
| alpha-l-rhamnosidase c-terminal domain-containing protein | CPT03_RS09855 | Not Available | Negative | 2388396 - 2390873 | 93515.6 |
| methionine abc transporter substrate-binding lipoprotein metq | CPT03_RS09860 | Not Available | Negative | 2390956 - 2391774 | 29787.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

