Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | CPT03_RS09615 | Not Available | Negative | 2330876 - 2333275 | 90358.1 |
| ribulose-phosphate 3-epimerase | CPT03_RS09620 | Not Available | Negative | 2333297 - 2333968 | 23918.1 |
| polyribonucleotide nucleotidyltransferase | CPT03_RS09625 | Not Available | Negative | 2334085 - 2336235 | 77922.7 |
| 30s ribosomal protein s15 | CPT03_RS09630 | Not Available | Negative | 2336375 - 2336653 | 10739.2 |
| acyl-coa thioesterase | CPT03_RS09635 | Not Available | Positive | 2336806 - 2337225 | 16149.5 |
| mate family efflux transporter | CPT03_RS09640 | Not Available | Positive | 2337568 - 2338995 | 51218.3 |
| duf983 domain-containing protein | CPT03_RS09645 | Not Available | Negative | 2339051 - 2339458 | 15450.2 |
| crp/fnr family transcriptional regulator | CPT03_RS09650 | Not Available | Negative | 2339523 - 2340104 | 22618.9 |
| duf3575 domain-containing protein | CPT03_RS09655 | Not Available | Positive | 2340234 - 2341016 | 28673.7 |
| d-alanine--d-alanine ligase | CPT03_RS09660 | Not Available | Negative | 2341072 - 2342058 | 36407.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

