Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holliday junction branch migration dna helicase ruvb | CPT03_RS09420 | Not Available | Positive | 2281655 - 2282677 | 37615.3 |
| hypothetical protein | CPT03_RS09425 | Not Available | Negative | 2282691 - 2282900 | 7966.5 |
| trna epoxyqueuosine(34) reductase queg | CPT03_RS09430 | Not Available | Positive | 2282977 - 2283921 | 36144.0 |
| 3'-5' exonuclease | CPT03_RS09435 | Not Available | Negative | 2283939 - 2284895 | 36456.3 |
| duf3857 domain-containing protein | CPT03_RS09440 | Not Available | Positive | 2285046 - 2287022 | 74633.6 |
| duf3857 domain-containing protein | CPT03_RS09445 | Not Available | Positive | 2287022 - 2288929 | 72221.7 |
| c40 family peptidase | CPT03_RS09450 | Not Available | Negative | 2289050 - 2289565 | 18873.9 |
| dna mismatch repair protein muts | CPT03_RS09455 | Not Available | Negative | 2289571 - 2292180 | 97713.3 |
| menaquinone biosynthetic enzyme mqna/mqnd family protein | CPT03_RS09460 | Not Available | Negative | 2292267 - 2292992 | 26996.3 |
| histidine phosphatase family protein | CPT03_RS09465 | Not Available | Negative | 2292998 - 2293609 | 22966.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

