Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c biogenesis protein resb | CPT03_RS23010 | Not Available | Positive | 238212 - 240110 | 71200.0 |
| c-type cytochrome biogenesis protein ccsb | CPT03_RS23015 | Not Available | Positive | 240137 - 241492 | 50260.7 |
| 2'-5' rna ligase family protein | CPT03_RS00925 | Not Available | Positive | 241510 - 242088 | 21753.9 |
| prolyl oligopeptidase family serine peptidase | CPT03_RS00930 | Not Available | Positive | 242150 - 243115 | 36747.4 |
| glycosyl hydrolase family 95 catalytic domain-containing protein | CPT03_RS00935 | Not Available | Positive | 243252 - 245531 | 85243.1 |
| glycoside hydrolase family 78 protein | CPT03_RS00940 | Not Available | Positive | 245630 - 248287 | 98762.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | CPT03_RS00945 | Not Available | Negative | 248378 - 249814 | 52903.8 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS00950 | Not Available | Negative | 249820 - 252948 | 112792.0 |
| alpha-l-rhamnosidase | CPT03_RS00955 | Not Available | Positive | 253474 - 256140 | 99610.7 |
| gntr family transcriptional regulator | CPT03_RS00960 | Not Available | Positive | 256194 - 257222 | 39732.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

