Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | CPT03_RS09320 | Not Available | Positive | 2260162 - 2260938 | 29449.1 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | CPT03_RS09325 | Not Available | Positive | 2260960 - 2262096 | 41510.8 |
| dethiobiotin synthase | CPT03_RS09330 | Not Available | Positive | 2262089 - 2262700 | 22260.0 |
| 50s ribosomal protein l20 | CPT03_RS09335 | Not Available | Negative | 2262762 - 2263106 | 12964.0 |
| 50s ribosomal protein l35 | CPT03_RS09340 | Not Available | Negative | 2263181 - 2263381 | 7331.21 |
| translation initiation factor if-3 | CPT03_RS09345 | Not Available | Negative | 2263408 - 2263977 | 21506.4 |
| threonine--trna ligase | CPT03_RS09350 | Not Available | Negative | 2263991 - 2265916 | 72953.1 |
| (fe-s)-binding protein | CPT03_RS09355 | Not Available | Negative | 2265994 - 2266731 | 27406.6 |
| mfs transporter | CPT03_RS09360 | Not Available | Negative | 2266774 - 2268072 | 48243.0 |
| head gin domain-containing protein | CPT03_RS09365 | Not Available | Negative | 2268118 - 2268828 | 24918.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

