Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ynce family protein | CPT03_RS09270 | Not Available | Negative | 2244978 - 2246087 | 40168.4 |
| pkd domain-containing protein | CPT03_RS09275 | Not Available | Negative | 2246139 - 2247053 | 33405.8 |
| ynce family protein | CPT03_RS09280 | Not Available | Negative | 2247065 - 2248216 | 42630.1 |
| tonb-dependent receptor | CPT03_RS09285 | Not Available | Negative | 2248221 - 2250284 | 78286.4 |
| response regulator transcription factor | CPT03_RS09290 | Not Available | Negative | 2250630 - 2251313 | 26217.1 |
| serine hydrolase | CPT03_RS09295 | Not Available | Positive | 2251512 - 2252759 | 48473.1 |
| polyphosphate kinase 2 family protein | CPT03_RS09300 | Not Available | Negative | 2252760 - 2253641 | 34386.8 |
| penicillin-binding protein 1a | CPT03_RS09305 | Not Available | Positive | 2253994 - 2256456 | 93887.7 |
| basic secretory protein-like protein | CPT03_RS09310 | Not Available | Positive | 2256550 - 2259615 | 114923.0 |
| giy-yig nuclease family protein | CPT03_RS09315 | Not Available | Negative | 2259676 - 2260026 | 13833.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

