Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug effflux mfs transporter | CPT03_RS09220 | Not Available | Positive | 2233990 - 2235180 | 42914.8 |
| hypothetical protein | CPT03_RS09225 | Not Available | Positive | 2235247 - 2236329 | 38218.8 |
| duf4833 domain-containing protein | CPT03_RS22790 | Not Available | Positive | 2236393 - 2237961 | 60458.4 |
| rna polymerase sigma-70 factor | CPT03_RS09235 | Not Available | Positive | 2238005 - 2238583 | 23098.9 |
| fecr family protein | CPT03_RS09240 | Not Available | Positive | 2238593 - 2239558 | 36370.4 |
| stn and carboxypeptidase regulatory-like domain-containing protein | CPT03_RS09245 | Not Available | Positive | 2239558 - 2241300 | 64070.8 |
| sir2 family nad-dependent protein deacylase | CPT03_RS09250 | Not Available | Negative | 2241293 - 2241982 | 25427.6 |
| duf6580 family putative transport protein | CPT03_RS09255 | Not Available | Negative | 2242066 - 2242647 | 21166.4 |
| duf5074 domain-containing protein | CPT03_RS09260 | Not Available | Negative | 2242692 - 2243783 | 40016.5 |
| cell surface protein | CPT03_RS09265 | Not Available | Negative | 2243848 - 2244948 | 39855.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

