Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS00870 | Not Available | Negative | 220170 - 220700 | 19917.7 |
| patatin-like phospholipase family protein | CPT03_RS00875 | Not Available | Negative | 220697 - 223027 | 88613.9 |
| tspo/mbr family protein | CPT03_RS00880 | Not Available | Negative | 223074 - 223547 | 18253.9 |
| glycoside hydrolase domain-containing protein | CPT03_RS00885 | Not Available | Negative | 223561 - 226545 | 111569.0 |
| cystathionine gamma-synthase family protein | CPT03_RS00890 | Not Available | Positive | 226680 - 227927 | 45342.3 |
| tonb-dependent receptor | CPT03_RS00895 | Not Available | Positive | 227949 - 230303 | 86091.6 |
| c-type cytochrome | CPT03_RS00900 | Not Available | Negative | 230472 - 233078 | 94438.2 |
| duf1080 domain-containing protein | CPT03_RS00905 | Not Available | Negative | 233113 - 233970 | 32084.2 |
| duf5916 domain-containing protein | CPT03_RS00910 | Not Available | Positive | 234180 - 236354 | 82766.2 |
| l,d-transpeptidase family protein | CPT03_RS00915 | Not Available | Positive | 236603 - 238060 | 55809.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

