Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4142 domain-containing protein | CPT03_RS08725 | Not Available | Negative | 2123322 - 2123861 | 19193.8 |
| helix-turn-helix domain-containing protein | CPT03_RS08730 | Not Available | Positive | 2123971 - 2124855 | 33986.0 |
| duf417 family protein | CPT03_RS08735 | Not Available | Positive | 2124916 - 2125494 | 21155.9 |
| phosphatase pap2 family protein | CPT03_RS08740 | Not Available | Negative | 2125497 - 2126054 | 20243.6 |
| lysr family transcriptional regulator | CPT03_RS08745 | Not Available | Negative | 2126214 - 2127146 | 35818.0 |
| nad(p)h-dependent oxidoreductase | CPT03_RS08750 | Not Available | Positive | 2127258 - 2127911 | 24734.0 |
| putative quinol monooxygenase | CPT03_RS08755 | Not Available | Positive | 2127862 - 2128152 | 10915.1 |
| aldo/keto reductase | CPT03_RS08760 | Not Available | Positive | 2128221 - 2129204 | 36022.7 |
| low affinity iron permease family protein | CPT03_RS08765 | Not Available | Negative | 2129250 - 2129702 | 16980.4 |
| gaf domain-containing protein | CPT03_RS08770 | Not Available | Positive | 2129950 - 2132313 | 91090.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

