Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | CPT03_RS08530 | Not Available | Positive | 2076286 - 2077446 | 42699.7 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS08535 | Not Available | Positive | 2077446 - 2080877 | 128294.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS08540 | Not Available | Positive | 2080883 - 2082256 | 52746.7 |
| hypothetical protein | CPT03_RS08545 | Not Available | Negative | 2082301 - 2082609 | 10662.7 |
| maue/doxx family redox-associated membrane protein | CPT03_RS08550 | Not Available | Negative | 2082689 - 2083120 | 16070.6 |
| arac family transcriptional regulator | CPT03_RS08555 | Not Available | Negative | 2083227 - 2084144 | 35285.0 |
| duf4198 domain-containing protein | CPT03_RS08565 | Not Available | Negative | 2084369 - 2085082 | 26081.8 |
| pepsy-associated tm helix domain-containing protein | CPT03_RS08570 | Not Available | Negative | 2085114 - 2086442 | 50043.8 |
| duf4374 domain-containing protein | CPT03_RS08575 | Not Available | Negative | 2086497 - 2087720 | 43699.5 |
| tonb-dependent receptor | CPT03_RS08580 | Not Available | Negative | 2087750 - 2090122 | 88286.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

