Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa thioesterase | CPT03_RS00820 | Not Available | Negative | 208242 - 208763 | 19406.5 |
| alpha-amylase | CPT03_RS00825 | Not Available | Positive | 208902 - 210392 | 57051.5 |
| duf5103 domain-containing protein | CPT03_RS00830 | Not Available | Negative | 210389 - 211657 | 48515.4 |
| abc-f family atp-binding cassette domain-containing protein | CPT03_RS00835 | Not Available | Negative | 211654 - 213582 | 72449.2 |
| quinone-dependent dihydroorotate dehydrogenase | CPT03_RS00840 | Not Available | Positive | 213622 - 214659 | 38286.4 |
| is1182 family transposase | CPT03_RS00845 | Not Available | Negative | 214989 - 216524 | 59178.9 |
| spore protein | CPT03_RS00850 | Not Available | Negative | 216699 - 216875 | 6583.1 |
| Trna-cys | Not Available | Not Available | Positive | 216904 - 216977 | Not Available |
| trmh family rna methyltransferase | CPT03_RS00860 | Not Available | Negative | 217027 - 217776 | 27461.3 |
| bama/tama family outer membrane protein | CPT03_RS00865 | Not Available | Positive | 217767 - 220160 | 92092.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

