Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | CPT03_RS08175 | Not Available | Negative | 1988342 - 1989751 | 50992.9 |
| efflux rnd transporter permease subunit | CPT03_RS08180 | Not Available | Negative | 1989791 - 1992988 | 115465.0 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS08185 | Not Available | Negative | 1993014 - 1994138 | 39962.9 |
| tetr/acrr family transcriptional regulator | CPT03_RS08190 | Not Available | Negative | 1994306 - 1994905 | 23326.4 |
| laci family dna-binding transcriptional regulator | CPT03_RS08195 | Not Available | Positive | 1995089 - 1996126 | 38163.5 |
| sugar kinase | CPT03_RS08200 | Not Available | Positive | 1996221 - 1997216 | 36962.9 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | CPT03_RS08205 | Not Available | Positive | 1997228 - 1997881 | 23634.6 |
| helix-turn-helix domain-containing protein | CPT03_RS08210 | Not Available | Negative | 1997925 - 1998254 | 12568.2 |
| hypothetical protein | CPT03_RS22775 | Not Available | Negative | 1998505 - 1998735 | 8334.87 |
| gfo/idh/moca family protein | CPT03_RS08220 | Not Available | Negative | 1998847 - 2000199 | 50393.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

