Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | CPT03_RS08125 | Not Available | Negative | 1980257 - 1980679 | 15762.8 |
| doxx family protein | CPT03_RS08130 | Not Available | Negative | 1980704 - 1981087 | 14049.8 |
| phosphatase pap2-related protein | CPT03_RS08135 | Not Available | Positive | 1981365 - 1981988 | 23635.8 |
| m16 family metallopeptidase | CPT03_RS08140 | Not Available | Negative | 1981982 - 1983265 | 47843.2 |
| m16 family metallopeptidase | CPT03_RS08145 | Not Available | Negative | 1983279 - 1984640 | 52159.1 |
| porin family protein | CPT03_RS08150 | Not Available | Negative | 1984854 - 1985420 | 20669.1 |
| class i sam-dependent methyltransferase | CPT03_RS08155 | Not Available | Positive | 1985596 - 1986318 | 27149.2 |
| cupin domain-containing protein | CPT03_RS08160 | Not Available | Negative | 1986328 - 1986663 | 12470.8 |
| gnat family n-acetyltransferase | CPT03_RS08165 | Not Available | Negative | 1986660 - 1987250 | 22693.0 |
| murein l,d-transpeptidase catalytic domain family protein | CPT03_RS08170 | Not Available | Positive | 1987464 - 1988267 | 29442.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

