Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna 2-thiouridine(34) synthase mnma | CPT03_RS07825 | Not Available | Positive | 1897022 - 1898113 | 40378.1 |
| bifunctional metallophosphatase/5'-nucleotidase | CPT03_RS07830 | Not Available | Negative | 1898206 - 1899165 | 35222.2 |
| 5'-nucleotidase c-terminal domain-containing protein | CPT03_RS07835 | Not Available | Negative | 1899143 - 1899910 | 28133.0 |
| glutathione peroxidase | CPT03_RS07840 | Not Available | Negative | 1900060 - 1900572 | 19302.3 |
| type i dna topoisomerase | CPT03_RS07845 | Not Available | Positive | 1900816 - 1903407 | 96956.5 |
| hypothetical protein | CPT03_RS07850 | Not Available | Positive | 1903419 - 1903823 | 15122.5 |
| alpha-2-macroglobulin family protein | CPT03_RS07855 | Not Available | Positive | 1903935 - 1909511 | 205929.0 |
| penicillin-binding protein 1c | CPT03_RS07860 | Not Available | Positive | 1909535 - 1912009 | 92856.5 |
| lysoplasmalogenase | CPT03_RS07865 | Not Available | Negative | 1912006 - 1912698 | 26419.8 |
| sterol desaturase family protein | CPT03_RS07870 | Not Available | Negative | 1912673 - 1913899 | 47552.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

