Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-glycero-alpha-d-manno-heptose-1,7- bisphosphate 7-phosphatase | CPT03_RS07620 | Not Available | Positive | 1853088 - 1853621 | 19804.8 |
| fructose-6-phosphate aldolase | CPT03_RS07625 | Not Available | Negative | 1853688 - 1854350 | 23387.4 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 1854490 - 1854589 | Not Available |
| glutamate synthase large subunit | CPT03_RS07640 | Not Available | Positive | 1855042 - 1859553 | 165967.0 |
| glutamate synthase subunit beta | CPT03_RS07645 | Not Available | Positive | 1859557 - 1861023 | 53686.4 |
| hypothetical protein | CPT03_RS07650 | Not Available | Negative | 1861099 - 1861704 | 22841.7 |
| metallophosphoesterase family protein | CPT03_RS07655 | Not Available | Negative | 1861685 - 1862479 | 29739.4 |
| ydei/ompd-associated family protein | CPT03_RS07660 | Not Available | Negative | 1862520 - 1863152 | 23831.1 |
| rna methyltransferase | CPT03_RS07665 | Not Available | Negative | 1863197 - 1863727 | 19629.8 |
| galactokinase | CPT03_RS07670 | Not Available | Negative | 1863767 - 1864918 | 42684.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

