Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| baseplate j/gp47 family protein | CPT03_RS07420 | Not Available | Positive | 1805293 - 1808511 | 120548.0 |
| hypothetical protein | CPT03_RS07425 | Not Available | Positive | 1808532 - 1811162 | 100580.0 |
| hypothetical protein | CPT03_RS07430 | Not Available | Positive | 1811169 - 1814018 | 107648.0 |
| contractile injection system tape measure protein | CPT03_RS07435 | Not Available | Positive | 1814022 - 1815488 | 56851.4 |
| atp-binding protein | CPT03_RS07440 | Not Available | Positive | 1815482 - 1816855 | 52636.3 |
| duf4157 domain-containing protein | CPT03_RS07445 | Not Available | Positive | 1816879 - 1818123 | 45585.8 |
| duf4157 domain-containing protein | CPT03_RS07450 | Not Available | Positive | 1818134 - 1819642 | 55008.1 |
| duf4157 domain-containing protein | CPT03_RS07455 | Not Available | Positive | 1819671 - 1824512 | 174885.0 |
| hypothetical protein | CPT03_RS07460 | Not Available | Positive | 1824535 - 1824969 | 16925.2 |
| response regulator transcription factor | CPT03_RS07465 | Not Available | Negative | 1824987 - 1825772 | 30552.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

