Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | CPT03_RS00715 | Not Available | Positive | 179439 - 180089 | 24677.2 |
| m13 family metallopeptidase | CPT03_RS00720 | Not Available | Negative | 180120 - 182156 | 76189.0 |
| dmt family transporter | CPT03_RS00725 | Not Available | Negative | 182469 - 183350 | 32532.0 |
| s9 family peptidase | CPT03_RS00730 | Not Available | Positive | 183521 - 185674 | 81085.6 |
| valine--trna ligase | CPT03_RS00735 | Not Available | Positive | 185862 - 188528 | 102130.0 |
| helix-turn-helix transcriptional regulator | CPT03_RS00740 | Not Available | Negative | 188588 - 189190 | 21855.2 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS00745 | Not Available | Positive | 189455 - 190567 | 40372.7 |
| efflux rnd transporter permease subunit | CPT03_RS00750 | Not Available | Positive | 190574 - 193708 | 113264.0 |
| efflux transporter outer membrane subunit | CPT03_RS00755 | Not Available | Positive | 193728 - 195107 | 50748.9 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | CPT03_RS00760 | Not Available | Negative | 195131 - 195592 | 18156.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

