Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | CPT03_RS07170 | Not Available | Positive | 1756372 - 1756764 | 15478.9 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | CPT03_RS07175 | Not Available | Positive | 1756891 - 1758153 | 46681.9 |
| tetr/acrr family transcriptional regulator | CPT03_RS07180 | Not Available | Positive | 1758159 - 1759916 | 67476.2 |
| hypothetical protein | CPT03_RS07185 | Not Available | Positive | 1759950 - 1760285 | 12804.7 |
| ynfa family protein | CPT03_RS07190 | Not Available | Positive | 1760300 - 1760638 | 12475.4 |
| hypothetical protein | CPT03_RS07195 | Not Available | Positive | 1760640 - 1760906 | 9765.28 |
| hypothetical protein | CPT03_RS07200 | Not Available | Positive | 1761173 - 1761436 | 9998.2 |
| zeta toxin family protein | CPT03_RS07205 | Not Available | Positive | 1761423 - 1762070 | 24787.2 |
| carboxypeptidase-like regulatory domain-containing protein | CPT03_RS07210 | Not Available | Positive | 1762471 - 1763193 | 27044.1 |
| hypothetical protein | CPT03_RS07215 | Not Available | Negative | 1763207 - 1763491 | 11201.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

