Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | CPT03_RS06970 | Not Available | Negative | 1709592 - 1709834 | 8942.05 |
| hypothetical protein | CPT03_RS06980 | Not Available | Positive | 1710149 - 1710364 | 8329.73 |
| nerd domain-containing protein | CPT03_RS06985 | Not Available | Negative | 1710430 - 1711176 | 29156.0 |
| eco57i restriction-modification methylase domain-containing protein | CPT03_RS06990 | Not Available | Positive | 1711723 - 1714806 | 119310.0 |
| duf4268 domain-containing protein | CPT03_RS06995 | Not Available | Positive | 1714869 - 1715990 | 43639.3 |
| atp-dependent nuclease | CPT03_RS07000 | Not Available | Positive | 1716041 - 1718122 | 80754.6 |
| uvrd-helicase domain-containing protein | CPT03_RS07005 | Not Available | Positive | 1718124 - 1719944 | 71727.4 |
| hypothetical protein | CPT03_RS07010 | Not Available | Positive | 1719972 - 1720334 | 13912.4 |
| hypothetical protein | CPT03_RS23055 | Not Available | Negative | 1720398 - 1720541 | 5165.48 |
| carboxypeptidase-like regulatory domain-containing protein | CPT03_RS07015 | Not Available | Positive | 1720578 - 1721297 | 26873.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

