Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine--trna ligase | CPT03_RS06920 | Not Available | Positive | 1698142 - 1699917 | 66421.8 |
| coth kinase family protein | CPT03_RS06925 | Not Available | Negative | 1699967 - 1701736 | 65591.2 |
| ai-2e family transporter | CPT03_RS06930 | Not Available | Negative | 1701800 - 1702942 | 41863.8 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | CPT03_RS06935 | Not Available | Positive | 1703026 - 1704396 | 49644.6 |
| helix-turn-helix domain-containing protein | CPT03_RS23355 | Not Available | Positive | 1704840 - 1704998 | 6124.67 |
| site-specific integrase | CPT03_RS06945 | Not Available | Positive | 1704995 - 1706122 | 43867.7 |
| hypothetical protein | CPT03_RS06950 | Not Available | Positive | 1706125 - 1706979 | 33460.9 |
| helix-turn-helix domain-containing protein | CPT03_RS06955 | Not Available | Positive | 1707074 - 1707418 | 13165.9 |
| primase-helicase family protein | CPT03_RS06960 | Not Available | Positive | 1707564 - 1708688 | 44294.4 |
| plasmid mobilization protein | CPT03_RS06965 | Not Available | Positive | 1709186 - 1709623 | 16960.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

