Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS00665 | Not Available | Negative | 166994 - 168511 | 56739.0 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS00670 | Not Available | Negative | 168531 - 171545 | 110216.0 |
| nucleoside triphosphate pyrophosphohydrolase | CPT03_RS00675 | Not Available | Negative | 171964 - 172773 | 30872.6 |
| hypothetical protein | CPT03_RS00680 | Not Available | Negative | 172781 - 173077 | 10834.8 |
| ai-2e family transporter | CPT03_RS00685 | Not Available | Negative | 173102 - 174214 | 41555.7 |
| aldo/keto reductase | CPT03_RS00690 | Not Available | Negative | 174309 - 175262 | 35611.0 |
| trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd | CPT03_RS00695 | Not Available | Negative | 175347 - 176027 | 25281.4 |
| mmcq/yjbr family dna-binding protein | CPT03_RS00700 | Not Available | Positive | 176080 - 176415 | 13147.0 |
| tonb-dependent receptor | CPT03_RS00705 | Not Available | Negative | 176419 - 178878 | 92010.1 |
| hypothetical protein | CPT03_RS00710 | Not Available | Negative | 179127 - 179333 | 7783.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

