Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor domain-containing protein | CPT03_RS06520 | Not Available | Negative | 1593761 - 1596187 | 91353.5 |
| lta synthase family protein | CPT03_RS06525 | Not Available | Negative | 1596198 - 1598168 | 75349.2 |
| voc family protein | CPT03_RS06530 | Not Available | Positive | 1598424 - 1598810 | 14490.9 |
| atp-binding protein | CPT03_RS06535 | Not Available | Negative | 1598826 - 1601162 | 87657.6 |
| smp-30/gluconolactonase/lre family protein | CPT03_RS06540 | Not Available | Positive | 1601292 - 1602182 | 32383.7 |
| ilvd/edd family dehydratase | CPT03_RS06545 | Not Available | Positive | 1602193 - 1603905 | 61557.7 |
| sdr family nad(p)-dependent oxidoreductase | CPT03_RS06550 | Not Available | Positive | 1603928 - 1604701 | 26849.2 |
| glycoside hydrolase family 99 protein | CPT03_RS06555 | Not Available | Positive | 1604694 - 1605758 | 40737.0 |
| tonb-dependent receptor | CPT03_RS06560 | Not Available | Negative | 1605801 - 1608239 | 91476.9 |
| sensor histidine kinase | CPT03_RS06565 | Not Available | Positive | 1608462 - 1609532 | 40721.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

