Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1572 family protein | CPT03_RS06175 | Not Available | Negative | 1511795 - 1512244 | 17304.7 |
| alpha/beta hydrolase | CPT03_RS06180 | Not Available | Negative | 1512263 - 1512919 | 24673.5 |
| hypothetical protein | CPT03_RS06185 | Not Available | Positive | 1512963 - 1513307 | 13556.1 |
| duf2461 domain-containing protein | CPT03_RS06190 | Not Available | Positive | 1513491 - 1514189 | 27282.2 |
| hybrid sensor histidine kinase/response regulator transcription factor | CPT03_RS06195 | Not Available | Negative | 1514194 - 1518222 | 152689.0 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS06200 | Not Available | Positive | 1518437 - 1521658 | 120316.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS06205 | Not Available | Positive | 1521691 - 1523475 | 67849.6 |
| alpha-l-fucosidase | CPT03_RS06210 | Not Available | Positive | 1523521 - 1524960 | 55161.8 |
| duf2264 domain-containing protein | CPT03_RS06215 | Not Available | Positive | 1524957 - 1526213 | 47243.6 |
| universal stress protein | CPT03_RS06220 | Not Available | Negative | 1526210 - 1527058 | 31213.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

