Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionyl-trna formyltransferase | CPT03_RS00565 | Not Available | Negative | 137457 - 138365 | 33470.6 |
| exo-beta-n-acetylmuramidase namz domain-containing protein | CPT03_RS00570 | Not Available | Negative | 138412 - 139686 | 47119.1 |
| rna polymerase sigma-70 factor | CPT03_RS00575 | Not Available | Negative | 139728 - 140318 | 23206.1 |
| fecr family protein | CPT03_RS00580 | Not Available | Positive | 140559 - 141731 | 43945.1 |
| tonb-dependent receptor | CPT03_RS00585 | Not Available | Positive | 141955 - 145338 | 125818.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS00590 | Not Available | Positive | 145350 - 147041 | 63671.1 |
| duf3863 domain-containing protein | CPT03_RS00595 | Not Available | Positive | 147107 - 148462 | 51710.7 |
| hypothetical protein | CPT03_RS00600 | Not Available | Positive | 148452 - 150146 | 65028.0 |
| abc transporter permease | CPT03_RS00605 | Not Available | Positive | 150291 - 151511 | 46008.4 |
| yfit family bacillithiol transferase | CPT03_RS00610 | Not Available | Negative | 151514 - 152059 | 21135.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

