Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron chaperone | CPT03_RS05880 | Not Available | Negative | 1439529 - 1439909 | 14254.2 |
| phopq-activated pathogenicity-related family protein | CPT03_RS05885 | Not Available | Positive | 1439990 - 1441357 | 51537.8 |
| duf92 domain-containing protein | CPT03_RS05890 | Not Available | Negative | 1441363 - 1442082 | 25622.2 |
| atp-dependent dna helicase | CPT03_RS05895 | Not Available | Negative | 1442098 - 1444008 | 71921.5 |
| tetratricopeptide repeat protein | CPT03_RS05900 | Not Available | Positive | 1444121 - 1444846 | 27428.5 |
| glycoside hydrolase family 18 protein | CPT03_RS05905 | Not Available | Positive | 1444893 - 1445921 | 38080.7 |
| alpha/beta hydrolase | CPT03_RS05910 | Not Available | Negative | 1445934 - 1446695 | 28208.1 |
| duf5916 domain-containing protein | CPT03_RS05915 | Not Available | Positive | 1446794 - 1449214 | 92951.0 |
| pldc n-terminal domain-containing protein | CPT03_RS23350 | Not Available | Positive | 1449222 - 1449392 | 6532.43 |
| glycoside hydrolase family 5 protein | CPT03_RS05925 | Not Available | Positive | 1449469 - 1450530 | 41157.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

