Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent transcriptional regulator | CPT03_RS05730 | Not Available | Positive | 1401940 - 1403313 | 50977.9 |
| sensor histidine kinase | CPT03_RS05735 | Not Available | Positive | 1403319 - 1404584 | 47591.2 |
| duf5686 and carboxypeptidase-like regulatory domain-containing protein | CPT03_RS05740 | Not Available | Positive | 1404768 - 1407326 | 98490.0 |
| atp-binding cassette domain-containing protein | CPT03_RS05745 | Not Available | Negative | 1407348 - 1408004 | 24985.4 |
| hypothetical protein | CPT03_RS05750 | Not Available | Negative | 1408001 - 1408306 | 12085.3 |
| bifunctional gnat family n-acetyltransferase/carbon-nitrogen hydrolase family protein | CPT03_RS05755 | Not Available | Positive | 1408482 - 1409990 | 57735.1 |
| gfo/idh/moca family protein | CPT03_RS05760 | Not Available | Negative | 1410018 - 1411100 | 40330.8 |
| pqq-binding-like beta-propeller repeat protein | CPT03_RS05765 | Not Available | Positive | 1411238 - 1413073 | 67223.5 |
| membrane or secreted protein | CPT03_RS05770 | Not Available | Negative | 1413075 - 1413785 | 26137.7 |
| phosphatase pap2 family protein | CPT03_RS05775 | Not Available | Positive | 1413923 - 1414684 | 27972.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

