Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama family transporter | CPT03_RS05685 | Not Available | Negative | 1393318 - 1394178 | 29779.0 |
| hypothetical protein | CPT03_RS05690 | Not Available | Positive | 1394474 - 1394740 | 9478.49 |
| pseudouridine synthase | CPT03_RS05695 | Not Available | Positive | 1394784 - 1395461 | 26095.8 |
| (deoxy)nucleoside triphosphate pyrophosphohydrolase | CPT03_RS05700 | Not Available | Positive | 1395471 - 1395866 | 14822.9 |
| hlyd family efflux transporter periplasmic adaptor subunit | CPT03_RS22935 | Not Available | Positive | 1396010 - 1396552 | 20024.1 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS22940 | Not Available | Positive | 1396570 - 1397256 | 25352.7 |
| tolc family protein | CPT03_RS05710 | Not Available | Positive | 1397267 - 1398757 | 56068.8 |
| abc transporter atp-binding protein | CPT03_RS05715 | Not Available | Positive | 1398781 - 1399446 | 24611.8 |
| abc transporter permease | CPT03_RS05720 | Not Available | Positive | 1399467 - 1400702 | 46230.5 |
| abc transporter permease | CPT03_RS05725 | Not Available | Positive | 1400735 - 1401919 | 44027.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

