Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ile | Not Available | Not Available | Positive | 1382861 - 1382935 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 1382951 - 1383027 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 1383253 - 1386129 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1386306 - 1386417 | Not Available |
| outer membrane beta-barrel protein | CPT03_RS05655 | Not Available | Positive | 1386711 - 1387352 | 23203.1 |
| is1182 family transposase | CPT03_RS05660 | Not Available | Positive | 1387491 - 1389026 | 58679.1 |
| phoh family protein | CPT03_RS05665 | Not Available | Positive | 1389248 - 1390597 | 50663.8 |
| m1 family metallopeptidase | CPT03_RS05670 | Not Available | Positive | 1390620 - 1392509 | 71833.2 |
| glyoxalase superfamily protein | CPT03_RS05675 | Not Available | Negative | 1392512 - 1392880 | 14279.1 |
| hypothetical protein | CPT03_RS05680 | Not Available | Positive | 1393076 - 1393321 | 9230.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

