Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siderophore-interacting protein | CPT03_RS05585 | Not Available | Positive | 1369365 - 1370054 | 25604.6 |
| duf3050 domain-containing protein | CPT03_RS05590 | Not Available | Positive | 1370091 - 1370879 | 30176.6 |
| tlpa family protein disulfide reductase | CPT03_RS05595 | Not Available | Negative | 1370881 - 1371363 | 18521.6 |
| aminoacyl-histidine dipeptidase | CPT03_RS05600 | Not Available | Positive | 1371582 - 1373042 | 52840.0 |
| c-type cytochrome | CPT03_RS05605 | Not Available | Positive | 1373069 - 1375363 | 85423.2 |
| ribose 5-phosphate isomerase b | CPT03_RS05610 | Not Available | Positive | 1375375 - 1375824 | 16239.6 |
| duf4397 domain-containing protein | CPT03_RS05615 | Not Available | Negative | 1375831 - 1376550 | 25920.3 |
| l,d-transpeptidase family protein | CPT03_RS05620 | Not Available | Negative | 1376789 - 1378429 | 62796.7 |
| s41 family peptidase | CPT03_RS05625 | Not Available | Negative | 1379081 - 1380304 | 46310.4 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1381226 - 1382747 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

