Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine phosphate synthase | CPT03_RS05535 | Not Available | Negative | 1358110 - 1358754 | 22972.1 |
| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | CPT03_RS05540 | Not Available | Negative | 1358751 - 1359509 | 27587.2 |
| thiamine phosphate synthase | CPT03_RS05545 | Not Available | Negative | 1359503 - 1360093 | 21965.3 |
| phosphomethylpyrimidine synthase thic | CPT03_RS05550 | Not Available | Negative | 1360094 - 1361977 | 70112.5 |
| sulfur carrier protein this | CPT03_RS05555 | Not Available | Negative | 1362026 - 1362226 | 7187.56 |
| mfs transporter | CPT03_RS05560 | Not Available | Positive | 1362571 - 1363713 | 41671.3 |
| ytxh domain-containing protein | CPT03_RS05565 | Not Available | Negative | 1363725 - 1364129 | 14437.1 |
| tetratricopeptide repeat protein | CPT03_RS05570 | Not Available | Positive | 1364275 - 1367151 | 109305.0 |
| mfs transporter | CPT03_RS05575 | Not Available | Positive | 1367254 - 1368420 | 40762.2 |
| arac family transcriptional regulator | CPT03_RS05580 | Not Available | Positive | 1368439 - 1369287 | 32464.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

