Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pycsar system effector family protein | CPT03_RS05485 | Not Available | Positive | 1344758 - 1345969 | 46345.2 |
| polyphosphate kinase 1 | CPT03_RS05490 | Not Available | Positive | 1345977 - 1347944 | 74889.5 |
| sdia-regulated domain-containing protein | CPT03_RS05495 | Not Available | Positive | 1347958 - 1348827 | 32806.2 |
| gaf domain-containing protein | CPT03_RS05500 | Not Available | Positive | 1348976 - 1351345 | 91401.3 |
| bama/tama family outer membrane protein | CPT03_RS05505 | Not Available | Positive | 1351347 - 1353935 | 98841.7 |
| s1 rna-binding domain-containing protein | CPT03_RS05510 | Not Available | Negative | 1353925 - 1354758 | 31349.6 |
| hypothetical protein | CPT03_RS05515 | Not Available | Negative | 1354819 - 1355118 | 11265.8 |
| hesa/moeb/thif family protein | CPT03_RS05520 | Not Available | Negative | 1355193 - 1356221 | 37714.3 |
| 2-iminoacetate synthase thih | CPT03_RS05525 | Not Available | Negative | 1356229 - 1357347 | 42975.4 |
| thiazole synthase | CPT03_RS05530 | Not Available | Negative | 1357340 - 1358104 | 27323.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

