Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CPT03_RS05390 | Not Available | Positive | 1322452 - 1322679 | 8322.3 |
| hypothetical protein | CPT03_RS05395 | Not Available | Positive | 1322676 - 1323128 | 16795.5 |
| hypothetical protein | CPT03_RS05400 | Not Available | Negative | 1323137 - 1323385 | 9755.54 |
| substrate-binding domain-containing protein | CPT03_RS05405 | Not Available | Negative | 1323453 - 1326200 | 103145.0 |
| sugar porter family mfs transporter | CPT03_RS05410 | Not Available | Positive | 1326532 - 1327866 | 48852.2 |
| pfkb family carbohydrate kinase | CPT03_RS05415 | Not Available | Positive | 1327878 - 1328789 | 33961.6 |
| susc/raga family tonb-linked outer membrane protein | CPT03_RS05420 | Not Available | Positive | 1328839 - 1331919 | 112911.0 |
| ragb/susd family nutrient uptake outer membrane protein | CPT03_RS05425 | Not Available | Positive | 1331937 - 1333655 | 64557.8 |
| glycoside hydrolase family 32 protein | CPT03_RS05430 | Not Available | Positive | 1333712 - 1335361 | 63122.4 |
| c-type cytochrome | CPT03_RS05435 | Not Available | Negative | 1335432 - 1335854 | 15532.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

