Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrite reductase large subunit nirb | CPT03_RS05340 | Not Available | Negative | 1307210 - 1309723 | 92372.7 |
| uroporphyrinogen-iii c-methyltransferase | CPT03_RS05345 | Not Available | Positive | 1309996 - 1310766 | 27792.9 |
| chloride channel protein | CPT03_RS05350 | Not Available | Negative | 1310763 - 1312640 | 66866.7 |
| crp/fnr family transcriptional regulator | CPT03_RS05355 | Not Available | Positive | 1312923 - 1313573 | 24482.8 |
| glycoside hydrolase family 140 protein | CPT03_RS05360 | Not Available | Negative | 1313570 - 1314967 | 53063.2 |
| endonuclease/exonuclease/phosphatase family protein | CPT03_RS05365 | Not Available | Positive | 1315127 - 1315972 | 31576.3 |
| class i sam-dependent methyltransferase | CPT03_RS05370 | Not Available | Positive | 1316040 - 1316801 | 28787.0 |
| cardiolipin synthase | CPT03_RS05375 | Not Available | Negative | 1317247 - 1318698 | 55144.1 |
| hypothetical protein | CPT03_RS05380 | Not Available | Positive | 1318820 - 1320979 | 82054.0 |
| hypothetical protein | CPT03_RS05385 | Not Available | Negative | 1320985 - 1322367 | 52963.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

