Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1080 domain-containing protein | CPT03_RS05190 | Not Available | Negative | 1277802 - 1278506 | 26058.6 |
| gluconate:h+ symporter | CPT03_RS05195 | Not Available | Positive | 1278589 - 1279902 | 46442.0 |
| rida family protein | CPT03_RS05200 | Not Available | Positive | 1279911 - 1280384 | 17202.8 |
| d-ta family plp-dependent enzyme | CPT03_RS05205 | Not Available | Positive | 1280377 - 1281510 | 41808.4 |
| dipeptidase | CPT03_RS05210 | Not Available | Positive | 1281514 - 1282581 | 39194.7 |
| hypothetical protein | CPT03_RS05220 | Not Available | Negative | 1283007 - 1283534 | 21445.2 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatb | CPT03_RS05225 | Not Available | Positive | 1283683 - 1285146 | 54013.4 |
| tlpa disulfide reductase family protein | CPT03_RS05230 | Not Available | Positive | 1285155 - 1286264 | 41185.2 |
| response regulator transcription factor | CPT03_RS05235 | Not Available | Positive | 1286373 - 1287062 | 26000.8 |
| rlua family pseudouridine synthase | CPT03_RS05240 | Not Available | Positive | 1287172 - 1287894 | 27574.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

