Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | CPT03_RS05140 | Not Available | Negative | 1261561 - 1263780 | 82561.8 |
| thua domain-containing protein | CPT03_RS05145 | Not Available | Negative | 1263820 - 1264578 | 28476.9 |
| laci family dna-binding transcriptional regulator | CPT03_RS05150 | Not Available | Negative | 1264685 - 1265722 | 38415.8 |
| xylulokinase | CPT03_RS05155 | Not Available | Positive | 1265885 - 1267372 | 53767.0 |
| xylose isomerase | CPT03_RS05160 | Not Available | Positive | 1267397 - 1268707 | 49508.9 |
| sodium/sugar symporter | CPT03_RS05165 | Not Available | Positive | 1268729 - 1270417 | 62102.6 |
| comec/rec2 family competence protein | CPT03_RS05170 | Not Available | Negative | 1270455 - 1272260 | 68955.6 |
| helix-hairpin-helix domain-containing protein | CPT03_RS05175 | Not Available | Negative | 1272267 - 1274315 | 77919.7 |
| merr family transcriptional regulator | CPT03_RS05180 | Not Available | Negative | 1274458 - 1274793 | 13115.9 |
| alanine--trna ligase | CPT03_RS05185 | Not Available | Positive | 1274942 - 1277641 | 101504.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

