Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ligase-associated dna damage response dexh box helicase | CPT03_RS05040 | Not Available | Negative | 1231223 - 1233745 | 95575.2 |
| atp-dependent dna ligase | CPT03_RS05045 | Not Available | Negative | 1233742 - 1235334 | 60498.2 |
| ligase-associated dna damage response exonuclease | CPT03_RS05050 | Not Available | Negative | 1235331 - 1236329 | 37076.1 |
| thua domain-containing protein | CPT03_RS05055 | Not Available | Positive | 1236536 - 1239028 | 93635.3 |
| tonb-dependent receptor | CPT03_RS05060 | Not Available | Positive | 1239087 - 1241417 | 86567.7 |
| duf4249 domain-containing protein | CPT03_RS05065 | Not Available | Positive | 1241422 - 1242216 | 29353.9 |
| sensor histidine kinase | CPT03_RS05070 | Not Available | Positive | 1242294 - 1243460 | 43034.1 |
| aldose 1-epimerase family protein | CPT03_RS05075 | Not Available | Negative | 1243457 - 1244323 | 32682.5 |
| pas domain s-box protein | CPT03_RS05080 | Not Available | Positive | 1244438 - 1246798 | 89469.3 |
| mlad family protein | CPT03_RS05085 | Not Available | Negative | 1246801 - 1247793 | 35761.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

