Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | CPT03_RS04990 | Not Available | Negative | 1221524 - 1222207 | 25449.7 |
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | CPT03_RS04995 | Not Available | Negative | 1222269 - 1223318 | 39989.1 |
| abc transporter permease | CPT03_RS05000 | Not Available | Positive | 1223493 - 1224734 | 45829.1 |
| carbon-nitrogen hydrolase family protein | CPT03_RS05005 | Not Available | Negative | 1224929 - 1225720 | 29169.6 |
| pyridoxal phosphate-dependent aminotransferase | CPT03_RS05010 | Not Available | Negative | 1225926 - 1227119 | 43660.0 |
| cation diffusion facilitator family transporter | CPT03_RS05015 | Not Available | Positive | 1227309 - 1228232 | 34512.8 |
| nudix domain-containing protein | CPT03_RS05020 | Not Available | Positive | 1228229 - 1228669 | 16959.0 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | CPT03_RS05025 | Not Available | Positive | 1228666 - 1229934 | 47429.3 |
| hypothetical protein | CPT03_RS05030 | Not Available | Positive | 1229977 - 1230588 | 23447.1 |
| ligase-associated dna damage response endonuclease pdem | CPT03_RS05035 | Not Available | Negative | 1230585 - 1231226 | 24500.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

