Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter ginsengisoli |
| Strain | strain T01R-27 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1674046 bp
Thymine Count
1667241 bp
Guanine Count
1014742 bp
Cytosine Count
1017331 bp
Genome Length
5373360 bp
Protein-coding Genes
4490 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydrase | CPT03_RS00465 | Not Available | Negative | 110071 - 110946 | 32541.4 |
| rlua family pseudouridine synthase | CPT03_RS00470 | Not Available | Positive | 111247 - 112278 | 39155.7 |
| aminotransferase class iv | CPT03_RS00475 | Not Available | Positive | 112279 - 113118 | 31825.4 |
| sulfatase-like hydrolase/transferase | CPT03_RS00480 | Not Available | Negative | 113238 - 114560 | 49384.9 |
| efflux rnd transporter permease subunit | CPT03_RS00485 | Not Available | Negative | 114648 - 117821 | 114078.0 |
| efflux rnd transporter periplasmic adaptor subunit | CPT03_RS00490 | Not Available | Negative | 117842 - 119005 | 40861.9 |
| tolc family protein | CPT03_RS00495 | Not Available | Negative | 119027 - 120373 | 51277.6 |
| tetr/acrr family transcriptional regulator | CPT03_RS00500 | Not Available | Negative | 120414 - 120998 | 22475.8 |
| duf6263 family protein | CPT03_RS00505 | Not Available | Positive | 121151 - 122068 | 33715.9 |
| hypothetical protein | CPT03_RS00510 | Not Available | Positive | 122141 - 123172 | 37665.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

