Citrobacter farmeri strain AUSMDU00008141

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter farmeri strain AUSMDU00008141 is a Gram-negative, rod-shaped bacterium known to inhabit various environments associated with human activities, specifically shower and washbasin drains, as well as wastewater drainage systems. The presence of flagella indicates motility, which may facilitate its movement within these aquatic environments. This strain is characterized by having two replicons, which are circular DNA molecules that can contribute to its genetic diversity and adaptability. C. farmeri is primarily associated with Homo sapiens, suggesting a potential role in the human microbiome or its impact on human health, especially in environments where humans frequently interact with water systems. The isolation of C. farmeri from domestic settings highlights its ecological niche and potential implications for water quality and hygiene. As a member of the Enterobacteriaceae family, it may play a role in the microbial community dynamics of wastewater systems, contributing to nutrient cycling and influencing the presence of other microorganisms. Understanding the characteristics and behavior of C. farmeri strain AUSMDU00008141 can provide insights into the microbiological processes occurring in human-associated aquatic environments and their broader implications for public health and sanitation practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter farmeri
Strainstrain AUSMDU00008141

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter farmeri strain AUSMDU00008141
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatshower; washbasin drains; wastewater drainage
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter farmeri strain AUSMDU00008141


Gene Summary

Adenine Count

1196952 bp

Thymine Count

1195451 bp

Guanine Count

1368722 bp

Cytosine Count

1369103 bp

Genome Length

5130228 bp

Protein-coding Genes

4561 genes

Non-Coding Genes

398 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ddrrrql repeat protein yjdpCI104_RS23135Not AvailableNegative4671844 - 467217313423.3
formate dehydrogenase subunit alphaCI104_RS23140Not AvailablePositive4672507 - 467465479028.8
sel1 family tpr-like repeat protein yjcoCI104_RS23145Not AvailablePositive4674758 - 467544725084.6
glutamate/aspartate:proton symporter gltpCI104_RS23150Not AvailableNegative4675560 - 467687047048.0
heme lyase nrfefg subunit nrfgCI104_RS23160Not AvailableNegative4677204 - 467782423591.5
hypothetical proteinCI104_RS23170Not AvailableNegative4677821 - 467994877380.3
cytochrome c nitrite reductase subunit nrfdCI104_RS23175Not AvailableNegative4679975 - 468093135087.2
cytochrome c nitrite reductase fe-s proteinCI104_RS23180Not AvailableNegative4680928 - 468159924501.6
cytochrome c nitrite reductase pentaheme subunitCI104_RS23185Not AvailableNegative4681596 - 468215920696.5
ammonia-forming nitrite reductase cytochrome c552 subunitCI104_RS23190Not AvailableNegative4682262 - 468369853560.6

Displaying genes 4541 – 4550 of 5117 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

71 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001327L-fuconateC6H11O6Chemical structure of L-fuconateNot available
Average179.149Da
Monoisotopic179.0561117Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 71 metabolites

Health Effects

No health effects information available for this bacterium.