Citrobacter freundii strain 18-1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 18-1 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain is notable for its presence in diverse habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters. It possesses true flagella, which facilitate mobility in various environments. This strain has been identified in a wide range of hosts, including Homo sapiens, various Metazoa, and multiple animal species such as Oryctolagus cuniculus (domestic rabbit), Canis lupus familiaris (domestic dog), and Felis catus (domestic cat). It is also found in aquatic species like Tilapia and Cyprinus carpio, as well as in amphibians and birds, indicating a broad ecological distribution. Citrobacter freundii strain 18-1 is recognized for its potential to cause opportunistic infections. In humans, it has been linked to urinary and respiratory tract infections, as well as infections associated with wounds. In animals, the strain similarly causes respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and respiratory infections in horses. These health effects highlight the bacterium's role as a pathogen in both humans and animals. The strain is nonsporulating and contains four replicons, which may contribute to its adaptability in various environments. The presence of Citrobacter freundii in diverse ecological niches, coupled with its opportunistic pathogenicity, underscores its significance in both clinical and environmental microbiology. Understanding its distribution and pathogenic potential can aid in managing infections and assessing ecological impacts in both human health and animal care.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 18-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 18-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 18-1 plasmid pA18-1, complete

Gene Summary

Adenine Count

38861 bp

Thymine Count

39496 bp

Guanine Count

39710 bp

Cytosine Count

41588 bp

Genome Length

159655 bp

Protein-coding Genes

174 genes

Non-Coding Genes

26 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ni(ii)/co(ii)-binding transcriptional repressor rcnrCFA70_RS21195Not AvailablePositive4118236 - 411850810123.4
amino acid permeaseCFA70_RS21200Not AvailableNegative4118562 - 411979144890.6
multidrug/biocide efflux pace transporterCFA70_RS21205Not AvailableNegative4119934 - 412038917471.6
lysr family transcriptional regulatorCFA70_RS21210Not AvailablePositive4120491 - 412137532817.4
acetyl-coa c-acetyltransferaseCFA70_RS21215Not AvailablePositive4121478 - 412265641327.6
5-dehydro-4-deoxy-d-glucuronate isomeraseCFA70_RS21220Not AvailablePositive4123127 - 412396331130.3
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudCFA70_RS21225Not AvailablePositive4124021 - 412478227099.6
arabinose-proton symporter araeCFA70_RS21230Not AvailablePositive4125098 - 412651651701.6
cupin domain-containing proteinCFA70_RS21235Not AvailableNegative4126590 - 412691612178.6
aspartate/glutamate racemaseCFA70_RS21240Not AvailablePositive4127058 - 412776525817.0

Displaying genes 4541 – 4550 of 5574 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total