Citrobacter freundii strain 18-1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 18-1 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. This strain is notable for its presence in diverse habitats, including hospital sewage, intestinal tracts, sewage systems, soil, and surface waters. It possesses true flagella, which facilitate mobility in various environments. This strain has been identified in a wide range of hosts, including Homo sapiens, various Metazoa, and multiple animal species such as Oryctolagus cuniculus (domestic rabbit), Canis lupus familiaris (domestic dog), and Felis catus (domestic cat). It is also found in aquatic species like Tilapia and Cyprinus carpio, as well as in amphibians and birds, indicating a broad ecological distribution. Citrobacter freundii strain 18-1 is recognized for its potential to cause opportunistic infections. In humans, it has been linked to urinary and respiratory tract infections, as well as infections associated with wounds. In animals, the strain similarly causes respiratory tract infections in dogs, pleuritis and urinary tract infections in cats, and respiratory infections in horses. These health effects highlight the bacterium's role as a pathogen in both humans and animals. The strain is nonsporulating and contains four replicons, which may contribute to its adaptability in various environments. The presence of Citrobacter freundii in diverse ecological niches, coupled with its opportunistic pathogenicity, underscores its significance in both clinical and environmental microbiology. Understanding its distribution and pathogenic potential can aid in managing infections and assessing ecological impacts in both human health and animal care.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 18-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 18-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 18-1 plasmid pA18-1, complete

Gene Summary

Adenine Count

38861 bp

Thymine Count

39496 bp

Guanine Count

39710 bp

Cytosine Count

41588 bp

Genome Length

159655 bp

Protein-coding Genes

174 genes

Non-Coding Genes

26 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna 2-thiocytidine(32) synthetase ttcaCFA70_RS02525Not AvailableNegative457259 - 45819435390.7
universal stress protein uspfCFA70_RS02530Not AvailableNegative458393 - 45882715804.2
ktsc domain-containing proteinCFA70_RS02535Not AvailableNegative458909 - 4591218072.78
porin ompcCFA70_RS02540Not AvailableNegative459268 - 46039841081.9
pyruvate:ferredoxin (flavodoxin) oxidoreductaseCFA70_RS02545Not AvailableNegative460765 - 464289128592.0
duf333 domain-containing proteinCFA70_RS02555Not AvailablePositive464564 - 4648308711.48
heat shock protein hsljCFA70_RS02560Not AvailableNegative464844 - 46526315098.5
2-hydroxyacid dehydrogenaseCFA70_RS02565Not AvailableNegative465376 - 46636536515.9
ydbh family proteinCFA70_RS02575Not AvailablePositive466981 - 46962097220.7
ynbe family lipoproteinCFA70_RS02580Not AvailablePositive469617 - 4698086929.69

Displaying genes 1171 – 1180 of 5574 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total