Citrobacter freundii strain 705SK3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain 705SK3 is a Gram-negative, rod-shaped bacterium characterized as a facultative anaerobe. It is known to possess true flagella, enabling motility. This strain has three replicons, indicating a complex genomic structure. Its habitats include hospital sewage, the intestinal tract of various hosts, soil, and surface waters, suggesting a versatile ecological niche. This strain has a broad range of hosts, including Homo sapiens, various mammals such as Canis lupus familiaris (dogs) and Felis catus (cats), and other animals like Oryctolagus cuniculus (rabbits) and aquatic species like Tilapia and Cyprinus carpio. The presence of C. freundii in such diverse hosts points to its adaptability and potential for transmission across species. C. freundii strain 705SK3 is associated with opportunistic infections, particularly in humans where it can cause infections of the urinary and respiratory tracts. It is also implicated in respiratory tract infections in dogs, pleuritis, and urinary tract infections in cats, as well as infections in horses. These health effects highlight the bacterium's role as an opportunistic pathogen, particularly in compromised hosts. The presence of C. freundii in both sewage and the intestinal tracts of various animals underscores its ecological significance. It may play a role in the microbial dynamics of hospital environments and natural ecosystems, contributing to nutrient cycling and the potential spread of antibiotic resistance. Understanding its ecology and pathogenic potential is essential for managing health risks associated with this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain 705SK3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain 705SK3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain 705SK3 chromosome, complete genome.

Gene Summary

Adenine Count

1261781 bp

Thymine Count

1256013 bp

Guanine Count

1363062 bp

Cytosine Count

1361983 bp

Genome Length

5242839 bp

Protein-coding Genes

4615 genes

Non-Coding Genes

528 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminoacyl-trna hydrolaseCES93_RS11225Not AvailableNegative2218836 - 221942021080.5
stress-induced protein ychhCES93_RS11230Not AvailablePositive2219695 - 221997610529.9
lysine-sensitive aspartokinase 3CES93_RS11235Not AvailableNegative2220100 - 222146149104.7
diaminobutyrate--2-oxoglutarate transaminaseCES93_RS11240Not AvailablePositive2222070 - 222345549664.3
pyridoxal phosphate-dependent decarboxylase family proteinCES93_RS11245Not AvailablePositive2223471 - 222493453184.6
c4-dicarboxylic acid transporter dauaCES93_RS11250Not AvailableNegative2225055 - 222671058417.4
ribose-phosphate diphosphokinaseCES93_RS11255Not AvailableNegative2226862 - 222780934218.3
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseCES93_RS11260Not AvailableNegative2228076 - 222892730794.2
lipoprotein insertase outer membrane protein lolbCES93_RS11265Not AvailableNegative2228924 - 222954723538.0
glutamyl-trna reductaseCES93_RS11270Not AvailablePositive2229759 - 223101546180.2

Displaying genes 2471 – 2480 of 5567 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total