Salipiger abyssi strain JLT2014

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Salipiger

Description

Salipiger abyssi strain JLT2014 is a Gram-negative, rod-shaped bacterium. This organism is notable for having a total of eight replicons, which may reflect its adaptability and genetic diversity. The strain is cataloged under several accessions, including NZ_CP015090.1, NZ_CP015091.1, NZ_CP015092.1, NZ_CP015093.1, NZ_CP015094.1, NZ_CP015096.1, NZ_CP015097.1, and NZ_CP015095.1. These accessions provide a comprehensive genetic framework for further research and characterization of the strain. The presence of multiple replicons in Salipiger abyssi strain JLT2014 could suggest a complex evolutionary history and may play a role in its metabolic versatility. This characteristic is often associated with the ability of bacteria to thrive in diverse environments, which aligns with the ecological niches typically occupied by members of the Salipiger genus. Understanding the genetic structure and traits of Salipiger abyssi strain JLT2014 can provide insights into its role within marine ecosystems, particularly in relation to nutrient cycling and interactions with other microbial communities. The ecological implications of its adaptability and genetic complexity may offer valuable perspectives on microbial life in extreme environments, such as deep-sea habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSalipiger
SpeciesSalipiger abyssi
Strainstrain JLT2014

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salipiger abyssi strain JLT2014 plasmid pPABY2, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter permeaseGa0080574_RS25475Not AvailableNegative34409 - 3530831316.4
nad(p)-dependent oxidoreductaseGa0080574_RS25480Not AvailableNegative35305 - 3619231165.4
sdr family nad(p)-dependent oxidoreductaseGa0080574_RS25485Not AvailableNegative36203 - 3695225892.2
abc transporter substrate-binding proteinGa0080574_RS25490Not AvailableNegative37026 - 3823442767.2
caib/baif coa transferase family proteinGa0080574_RS25495Not AvailablePositive38493 - 3972244050.5
succinate coa transferaseGa0080574_RS25500Not AvailablePositive40001 - 4154255142.5
saccharopine dehydrogenase family proteinGa0080574_RS25505Not AvailableNegative41673 - 4292645189.6
carboxynorspermidine decarboxylaseGa0080574_RS25510Not AvailableNegative43001 - 4409240829.6
pin domain-containing proteinGa0080574_RS25515Not AvailableNegative44284 - 4485920949.0
helix-turn-helix domain-containing proteinGa0080574_RS25520Not AvailableNegative44856 - 4532017039.4

Displaying genes 4831 – 4840 of 5022 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.