Salipiger abyssi strain JLT2014

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Salipiger

Description

Salipiger abyssi strain JLT2014 is a Gram-negative, rod-shaped bacterium. This organism is notable for having a total of eight replicons, which may reflect its adaptability and genetic diversity. The strain is cataloged under several accessions, including NZ_CP015090.1, NZ_CP015091.1, NZ_CP015092.1, NZ_CP015093.1, NZ_CP015094.1, NZ_CP015096.1, NZ_CP015097.1, and NZ_CP015095.1. These accessions provide a comprehensive genetic framework for further research and characterization of the strain. The presence of multiple replicons in Salipiger abyssi strain JLT2014 could suggest a complex evolutionary history and may play a role in its metabolic versatility. This characteristic is often associated with the ability of bacteria to thrive in diverse environments, which aligns with the ecological niches typically occupied by members of the Salipiger genus. Understanding the genetic structure and traits of Salipiger abyssi strain JLT2014 can provide insights into its role within marine ecosystems, particularly in relation to nutrient cycling and interactions with other microbial communities. The ecological implications of its adaptability and genetic complexity may offer valuable perspectives on microbial life in extreme environments, such as deep-sea habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSalipiger
SpeciesSalipiger abyssi
Strainstrain JLT2014

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Salipiger abyssi strain JLT2014 plasmid pPABY2, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional sugar phosphate isomerase/epimerase/4-hydroxyphenylpyruvate dioxygenase family proteinGa0080574_RS14610Not AvailableNegative2280635 - 228252169061.8
trap transporter large permeaseGa0080574_RS14615Not AvailableNegative2282532 - 228380644736.0
trap transporter small permeaseGa0080574_RS14620Not AvailableNegative2283810 - 228433718799.2
dctp family trap transporter solute-binding subunitGa0080574_RS14625Not AvailableNegative2284405 - 228541536059.4
shikimate dehydrogenaseGa0080574_RS14630Not AvailableNegative2285448 - 228634431532.1
tetr/acrr family transcriptional regulatorGa0080574_RS14635Not AvailablePositive2286482 - 228714425008.7
tripartite tricarboxylate transporter permeaseGa0080574_RS14640Not AvailableNegative2287236 - 228877453384.9
tripartite tricarboxylate transporter tctb family proteinGa0080574_RS14645Not AvailableNegative2288785 - 228921614619.3
bug family tripartite tricarboxylate transporter substrate binding proteinGa0080574_RS14650Not AvailableNegative2289318 - 229029533633.5
response regulator transcription factorGa0080574_RS14655Not AvailablePositive2290465 - 229113624882.8

Displaying genes 2771 – 2780 of 5022 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.