Salipiger profundus strain JLT2016

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Salipiger

Description

Salipiger profundus strain JLT2016 is characterized as a Gram-negative, rod-shaped bacterium. This strain is notable for possessing nine replicons, which suggests a complex genomic architecture that could facilitate adaptability and resilience in various environments. The multiple replicons may play a role in the organism's ability to manage its genetic information effectively, perhaps allowing for a greater capacity for horizontal gene transfer or a more versatile response to environmental stresses. The strain is associated with several accession numbers, including NZ_CP014796.1, NZ_CP014798.1, NZ_CP014800.1, NZ_CP014801.1, NZ_CP014802.1, NZ_CP014803.1, NZ_CP014804.1, NZ_CP014799.1, and NZ_CP014797.1. These accessions provide a reference for researchers seeking to explore the genomic characteristics and potential applications of Salipiger profundus JLT2016. From an ecological perspective, the traits of Salipiger profundus strain JLT2016 may indicate its potential role in biogeochemical cycling or interactions within its habitat. The rod shape and Gram-negative nature could suggest its involvement in various microbial processes, including nutrient degradation or symbiotic relationships in marine environments, where such bacteria are often found. Understanding its genetic makeup and ecological roles could shed light on the broader impacts of this strain within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSalipiger
SpeciesSalipiger profundus
Strainstrain JLT2016

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

4838 bp

Thymine Count

4598 bp

Guanine Count

7808 bp

Cytosine Count

7875 bp

Genome Length

25119 bp

Protein-coding Genes

25 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinGa0080559_RS23910Not AvailablePositive245 - 58012105.3
hypothetical proteinGa0080559_RS27340Not AvailableNegative654 - 8487423.16
transposaseGa0080559_RS23915Not AvailablePositive1096 - 234645920.1
mobq family relaxaseGa0080559_RS23920Not AvailablePositive2936 - 442655702.8
dna-binding proteinGa0080559_RS23925Not AvailableNegative4696 - 501311737.7
type ii toxin-antitoxin system vapc family toxinGa0080559_RS23930Not AvailableNegative5016 - 540513671.6
abrb/maze/spovt family dna-binding domain-containing proteinGa0080559_RS23935Not AvailableNegative5414 - 56779893.84
hypothetical proteinGa0080559_RS26455Not AvailableNegative5862 - 60206129.31
replication initiator protein aGa0080559_RS23940Not AvailablePositive6264 - 729539426.1
helix-turn-helix domain-containing proteinGa0080559_RS23945Not AvailablePositive7490 - 77419262.9

Displaying genes 1 – 10 of 5229 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

31 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001775(9Z)-octadecenoateC18H33O2Chemical structure of (9Z)-octadecenoateNot available
Average281.4534Da
Monoisotopic281.2480553Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001833(9Z)-hexadecenoateC16H29O2Chemical structure of (9Z)-hexadecenoateNot available
Average253.4003Da
Monoisotopic253.2167552Da
BASm0001842(5Z,8Z,11Z,14Z)-eicosatetraenoateC20H31O2Chemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoateNot available
Average303.467Da
Monoisotopic303.2329538Da

Displaying 1–10 of 31 metabolites

Health Effects

No health effects information available for this bacterium.