Salipiger profundus strain JLT2016

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Salipiger

Description

Salipiger profundus strain JLT2016 is characterized as a Gram-negative, rod-shaped bacterium. This strain is notable for possessing nine replicons, which suggests a complex genomic architecture that could facilitate adaptability and resilience in various environments. The multiple replicons may play a role in the organism's ability to manage its genetic information effectively, perhaps allowing for a greater capacity for horizontal gene transfer or a more versatile response to environmental stresses. The strain is associated with several accession numbers, including NZ_CP014796.1, NZ_CP014798.1, NZ_CP014800.1, NZ_CP014801.1, NZ_CP014802.1, NZ_CP014803.1, NZ_CP014804.1, NZ_CP014799.1, and NZ_CP014797.1. These accessions provide a reference for researchers seeking to explore the genomic characteristics and potential applications of Salipiger profundus JLT2016. From an ecological perspective, the traits of Salipiger profundus strain JLT2016 may indicate its potential role in biogeochemical cycling or interactions within its habitat. The rod shape and Gram-negative nature could suggest its involvement in various microbial processes, including nutrient degradation or symbiotic relationships in marine environments, where such bacteria are often found. Understanding its genetic makeup and ecological roles could shed light on the broader impacts of this strain within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusSalipiger
SpeciesSalipiger profundus
Strainstrain JLT2016

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

757370 bp

Thymine Count

760186 bp

Guanine Count

1543445 bp

Cytosine Count

1548583 bp

Genome Length

4609584 bp

Protein-coding Genes

4303 genes

Non-Coding Genes

166 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinGa0080559_RS23910Not AvailablePositive245 - 58012105.3
hypothetical proteinGa0080559_RS27340Not AvailableNegative654 - 8487423.16
transposaseGa0080559_RS23915Not AvailablePositive1096 - 234645920.1
mobq family relaxaseGa0080559_RS23920Not AvailablePositive2936 - 442655702.8
dna-binding proteinGa0080559_RS23925Not AvailableNegative4696 - 501311737.7
type ii toxin-antitoxin system vapc family toxinGa0080559_RS23930Not AvailableNegative5016 - 540513671.6
abrb/maze/spovt family dna-binding domain-containing proteinGa0080559_RS23935Not AvailableNegative5414 - 56779893.84
hypothetical proteinGa0080559_RS26455Not AvailableNegative5862 - 60206129.31
replication initiator protein aGa0080559_RS23940Not AvailablePositive6264 - 729539426.1
helix-turn-helix domain-containing proteinGa0080559_RS23945Not AvailablePositive7490 - 77419262.9

Displaying genes 1 – 10 of 5229 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.