Sphingopyxis macrogoltabida strain EY-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis macrogoltabida strain EY-1 is a Gram-negative bacterium characterized by its rod shape. This organism is isolated from soil environments, indicating its ecological role in terrestrial ecosystems. The strain possesses six replicons, which suggests a complex genomic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons can facilitate the organism's ability to manage various environmental stresses and potentially enhance its capacity for horizontal gene transfer. This could be significant in soil ecosystems, where interactions with other microbial communities are common. The strain is cataloged under several accessions, including NZ_CP012700.1, NZ_CP012701.1, NZ_CP012703.1, NZ_CP012705.1, NZ_CP012702.1, and NZ_CP012704.1, which provide a basis for further genomic analysis and understanding of its genetic makeup. In summary, Sphingopyxis macrogoltabida strain EY-1's rod shape, Gram-negative classification, and multiple replicons suggest a well-adapted soil bacterium with potential roles in nutrient cycling and interactions within the microbial community. Its ecological significance may be further explored through genomic studies, which could reveal insights into its metabolic pathways and environmental resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis macrogoltabida
Strainstrain EY-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis macrogoltabida strain EY-1 isolate activated sludge

Gene Summary

Adenine Count

6284 bp

Thymine Count

6457 bp

Guanine Count

10628 bp

Cytosine Count

11105 bp

Genome Length

34474 bp

Protein-coding Genes

41 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv conjugative transfer system protein traeAN936_RS22650Not AvailablePositive97121 - 9768720826.3
type-f conjugative transfer system secretin trakAN936_RS22655Not AvailablePositive97684 - 9848428238.8
trab/virb10 family proteinAN936_RS22660Not AvailablePositive98490 - 9977945408.8
dsbc family proteinAN936_RS22665Not AvailablePositive99788 - 10063329849.8
hypothetical proteinAN936_RS22670Not AvailablePositive100630 - 10134024032.6
type iv secretion system protein tracAN936_RS22675Not AvailablePositive101347 - 10392095079.7
hypothetical proteinAN936_RS22680Not AvailablePositive103917 - 10429413481.7
trbi f-type domain-containing proteinAN936_RS22685Not AvailablePositive104291 - 10484219338.9
s26 family signal peptidaseAN936_RS22690Not AvailablePositive104952 - 10542816922.7
type-f conjugative transfer system protein trawAN936_RS22695Not AvailablePositive105497 - 10608721735.1

Displaying genes 4771 – 4780 of 4899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0009270[4-(6-methylheptanoyl)-5-oxo-2H-furan-3-yl]methyl phosphateC13H19O7PChemical structure of [4-(6-methylheptanoyl)-5-oxo-2H-furan-3-yl]methyl phosphateNot available
Average318.263Da
Monoisotopic318.0879371Da
BASm0009271[(3S,4R)-4-(6-methylheptanoyl)-5-oxooxolan-3-yl]methyl phosphateC13H21O7PChemical structure of [(3S,4R)-4-(6-methylheptanoyl)-5-oxooxolan-3-yl]methyl phosphateNot available
Average320.279Da
Monoisotopic320.1035872Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.