Sphingopyxis macrogoltabida strain EY-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis macrogoltabida strain EY-1 is a Gram-negative bacterium characterized by its rod shape. This organism is isolated from soil environments, indicating its ecological role in terrestrial ecosystems. The strain possesses six replicons, which suggests a complex genomic structure that may contribute to its adaptability and metabolic versatility. The presence of multiple replicons can facilitate the organism's ability to manage various environmental stresses and potentially enhance its capacity for horizontal gene transfer. This could be significant in soil ecosystems, where interactions with other microbial communities are common. The strain is cataloged under several accessions, including NZ_CP012700.1, NZ_CP012701.1, NZ_CP012703.1, NZ_CP012705.1, NZ_CP012702.1, and NZ_CP012704.1, which provide a basis for further genomic analysis and understanding of its genetic makeup. In summary, Sphingopyxis macrogoltabida strain EY-1's rod shape, Gram-negative classification, and multiple replicons suggest a well-adapted soil bacterium with potential roles in nutrient cycling and interactions within the microbial community. Its ecological significance may be further explored through genomic studies, which could reveal insights into its metabolic pathways and environmental resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis macrogoltabida
Strainstrain EY-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis macrogoltabida strain EY-1


Gene Summary

Adenine Count

37851 bp

Thymine Count

39392 bp

Guanine Count

59892 bp

Cytosine Count

59817 bp

Genome Length

196952 bp

Protein-coding Genes

186 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
replication initiator protein aAN936_RS23485P60119Positive451 - 156342000.3
ribbon-helix-helix domain-containing proteinAN936_RS23490Not AvailableNegative1627 - 194110868.0
para family partition atpaseAN936_RS23495Not AvailableNegative1938 - 259122798.1
sprt-like domain-containing proteinAN936_RS23500Not AvailableNegative2718 - 335922584.1
type ii toxin-antitoxin system relb/dinj family antitoxinAN936_RS23505A0A140ND86Positive3774 - 405510314.4
type ii toxin-antitoxin system yafq family toxinAN936_RS23510Not AvailablePositive4024 - 434412212.5
helix-turn-helix domain-containing proteinAN936_RS23515Not AvailablePositive4380 - 479914875.6
dna-binding transcriptional regulatorAN936_RS23520Not AvailablePositive4869 - 50125276.64
hypothetical proteinAN936_RS24535Not AvailablePositive5026 - 52327667.98
hypothetical proteinAN936_RS23530Not AvailableNegative5204 - 54318138.64

Displaying genes 1 – 10 of 4899 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00022461-dehydro-L-sorboseC6H10O6Chemical structure of 1-dehydro-L-sorboseNot available
Average178.14Da
Monoisotopic178.047738Da
BASm0002530(E)-cinnamoyl-CoAC30H42N7O17P3SChemical structure of (E)-cinnamoyl-CoANot available
Average897.68Da
Monoisotopic897.1570751Da
BASm0002546(indol-3-yl)acetyl-CoAC31H39N8O17P3SChemical structure of (indol-3-yl)acetyl-CoANot available
Average920.68Da
Monoisotopic920.1388683Da
BASm0002950(E)-caffeateC9H7O4Chemical structure of (E)-caffeateNot available
Average179.152Da
Monoisotopic179.0349823Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003432di-trans,octa-cis-undecaprenyl diphosphateC55H89O7P2Chemical structure of di-trans,octa-cis-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.609999942Da
BASm0004345perillateC10H13O2Not available7694-45-3
Average165.213Da
Monoisotopic165.092103239Da
BASm0004859geranateC10H15O2Chemical structure of geranateNot available
Average167.229Da
Monoisotopic167.1077533Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.